Tommi Jaakkola

papers

1,435

total citations

papers (16)

Torsional Diffusion for Molecular Conformer Generation

NEURIPS 2022arXiv

347

citations

Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

ICML 2024arXiv

234

citations

Harmonic Self-Conditioned Flow Matching for joint Multi-Ligand Docking and Binding Site Design

ICML 2024

citations

Mol2Image: Improved Conditional Flow Models for Molecule to Image Synthesis

CVPR 2021

citations

Dirichlet Flow Matching with Applications to DNA Sequence Design

ICML 2024

citations

Tommi Jaakkola

papers (16)

Torsional Diffusion for Molecular Conformer Generation

Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

AlphaFold Meets Flow Matching for Generating Protein Ensembles

GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles

Poisson Flow Generative Models

Compositional Foundation Models for Hierarchical Planning

Subspace Diffusion Generative Models

Restart Sampling for Improving Generative Processes

Understanding Interlocking Dynamics of Cooperative Rationalization

DisCo-Diff: Enhancing Continuous Diffusion Models with Discrete Latents

Compositional Sculpting of Iterative Generative Processes

Scaling Inference Time Compute for Diffusion Models

Correcting Diffusion Generation through Resampling

Harmonic Self-Conditioned Flow Matching for joint Multi-Ligand Docking and Binding Site Design

Mol2Image: Improved Conditional Flow Models for Molecule to Image Synthesis

Dirichlet Flow Matching with Applications to DNA Sequence Design

papers (16)

Torsional Diffusion for Molecular Conformer Generation

Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

AlphaFold Meets Flow Matching for Generating Protein Ensembles

GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles

Poisson Flow Generative Models

Compositional Foundation Models for Hierarchical Planning

Subspace Diffusion Generative Models

Restart Sampling for Improving Generative Processes

Understanding Interlocking Dynamics of Cooperative Rationalization

DisCo-Diff: Enhancing Continuous Diffusion Models with Discrete Latents

Compositional Sculpting of Iterative Generative Processes

Scaling Inference Time Compute for Diffusion Models

Correcting Diffusion Generation through Resampling

Harmonic Self-Conditioned Flow Matching for joint Multi-Ligand Docking and Binding Site Design

Mol2Image: Improved Conditional Flow Models for Molecule to Image Synthesis

Dirichlet Flow Matching with Applications to DNA Sequence Design