"protein language models" Papers
12 papers found
Conference
Concept Bottleneck Language Models For Protein Design
Aya Ismail, Tuomas Oikarinen, Amy Wang et al.
ICLR 2025arXiv:2411.06090
16
citations
Distilling Structural Representations into Protein Sequence Models
Jeffrey Ouyang-Zhang, Chengyue Gong, Yue Zhao et al.
ICLR 2025
9
citations
Evolutionary Reasoning Does Not Arise in Standard Usage of Protein Language Models
Yasha Ektefaie, Andrew Shen, Lavik Jain et al.
NEURIPS 2025
Learning to engineer protein flexibility
Petr Kouba, Joan Planas-Iglesias, Jiri Damborsky et al.
ICLR 2025arXiv:2412.18275
4
citations
PRING: Rethinking Protein-Protein Interaction Prediction from Pairs to Graphs
Xinzhe Zheng, Hao Du, Fanding Xu et al.
NEURIPS 2025arXiv:2507.05101
2
citations
Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction
Jarrid Rector-Brooks, Mohsin Hasan, Zhangzhi Peng et al.
ICLR 2025arXiv:2410.08134
27
citations
Steering Protein Language Models
Long-Kai Huang, Rongyi Zhu, Bing He et al.
ICML 2025arXiv:2509.07983
3
citations
CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
Milong Ren, Tian Zhu, Haicang Zhang
ICML 2024
Diffusion Language Models Are Versatile Protein Learners
Xinyou Wang, Zaixiang Zheng, Fei YE et al.
ICML 2024arXiv:2402.18567
95
citations
ESM All-Atom: Multi-Scale Protein Language Model for Unified Molecular Modeling
Kangjie Zheng, Siyu Long, Tianyu Lu et al.
ICML 2024arXiv:2403.12995
15
citations
Feature Reuse and Scaling: Understanding Transfer Learning with Protein Language Models
Francesca-Zhoufan Li, Ava Amini, Yisong Yue et al.
ICML 2024
Knowledge-aware Reinforced Language Models for Protein Directed Evolution
Yuhao Wang, Qiang Zhang, Ming Qin et al.
ICML 2024